Huilin Tai

Hello! I am a first-year PhD student in Computer Science at Rice University, advised by Prof. Andrew H. Song in the APEX Lab. I am also affiliated with MD Anderson Cancer Center.

I completed a thesis-based M.S. in Computer Science at Columbia University, working with Prof. Mohammed AlQuraishi on evaluating representations from long-context genome language models. I received my B.Sc. in Statistics and Computer Science from McGill University, where I worked with Prof. Jun Ding, Prof. Anmar Khadra, and Prof. Hamed Hatami.

My research focuses on interpreting, evaluating, and controlling multimodal foundation models, with cancer research as a major application. I pursue two connected directions:

Interpretability, evaluation, and control. I study how models represent and select evidence, how their behavior changes under interventions, and what these observations can actually tell us about the mechanisms behind their predictions.

Multimodal foundation models for cancer. Histology, molecular measurements, and clinical data offer different, incomplete views of tumor biology. I am interested in how models can bring these views together to understand tissue organization, cellular interactions, and treatment response—and in distinguishing what can be inferred from the available evidence from what remains unresolved.

I am always happy to discuss research ideas or collaborations. Feel free to reach out! Outside of research, I enjoy squash, sketching, and writing.

Huilin Tai

Publications

thesis teaser
Cross-Species Antimicrobial Resistance Prediction from Genomic Foundation Models

Huilin Tai

Master’s Thesis, Columbia University, 2026

CellSexID teaser
CellSexID: Sex-Based Computational Tracking of Cellular Origins in Chimeric Models

Huilin Tai, Qian Li, Jingtao Wang, Jiahui Tan, Ryann Lang, Basil J. Petrof, Jun Ding

Cell Reports Methods, 2025

Spec-LLaVA teaser
Spec-LLaVA: Accelerating Vision-Language Models with Dynamic Tree-Based Speculative Decoding

Mingxiao Huo, Jiayi Zhang, Hewei Wang, Jinfeng Xu, Zheyu Chen, Huilin Tai, Ian Yijun Chen

ICML TTODLer Workshop, 2025

T2VBench teaser
T2VBench: Benchmarking Temporal Dynamics for Text-to-Video Generation

Pengliang Ji, Chuyang Xiao, Huilin Tai, Mingxiao Huo

CVPR Workshop, 2024

Ependymal teaser
Ependymal Cells Undergo an Astrocyte-Like Gliosis in Response to Chronic and Acute Neuroinflammation

Adam M.R. Groh, …, Huilin Tai, et al.

Journal of Neurochemistry, 2024

SPARC teaser
SPARC is a Novel Prognostic Biomarker for Ovarian Cancer

Xiaorong Guo, Huilin Tai, Xiaoqing Li, Peng Liu, Jin Liu, Shan Yu

Clinical and Experimental Obstetrics & Gynecology, 2024

UCK2 teaser
Targeting Uridine-Cytidine Kinase 2 Improves Immune Response of Hepatocellular Carcinoma

Dehai Wu, …, Huilin Tai, et al.

Cellular & Molecular Biology Letters, 2022

Contact

Email: ht62@rice.edu